PUBLICATIONS
HOW TO CITE MSAID SOFTWARE
The following publications by the MSAID team describe the technology in more detail.
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INFERYS rescoring: Boosting peptide identifications and scoring confidence of database search results
Daniel P. Zolg, Siegfried Gessulat, Carmen Paschke, et. al. Rapid Commun Mass Spectrom. 2021 May. ;e9128.
DOI: https://doi.org/10.1002/rcm.9128
RECENT PUBLICATIONS FEATURING MSAID SOFTWARE
Here is a compilation of publications from scientists and colleagues who use INFERYS, INFERYS Rescoring, or CHIMERYS
technologies for their research.
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Data-Dependent Acquisition with Precursor Coisolation Improves Proteome Coverage and Measurement Throughput for Label-Free Single-Cell Proteomics
DOI: https://doi.org/10.1002/anie.202303415
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Robust and Easy-to-Use One-Pot Workflow for Label-Free Single-Cell Proteomics
DOI: https://pubs.acs.org/doi/full/10.1021/acs.analchem.2c05022
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VAL1 acts as an assembly platform co-ordinating co-transcriptional repression and chromatin regulation at Arabidopsis FLC
Mikulski, P., Wolff, P., Lu, T. et al. VAL1 acts as an assembly platform co-ordinating co-transcriptional repression and chromatin regulation at Arabidopsis FLC. Nat Commun 13, 5542 (2022). DOI: https://doi.org/10.1038/s41467-022-32897-7
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ProteomicsML: An Online Platform for Community-Curated Datasets and Tutorials for Machine Learning in Proteomics
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, et al. October 2022. ChemRxiv.
DOI: https://chemrxiv.org/engage/chemrxiv/article-details/633c51a2ea6a223bde08c5df
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Coupling High-Field Asymmetric Ion Mobility Spectrometry with Capillary Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry Improves Protein Identifications in Bottom-Up Proteomic Analysis of Low Nanogram Samples
Kendall R. Johnson, Michal Greguš, and Alexander R. Ivanov. J. Proteome Res. 2022, 21, 10, 2453–2461.
DOI: https://doi.org/10.1021/acs.jproteome.2c00337.
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Deep Single-Shot NanoLC-MS Proteome Profiling with a 1500 Bar UHPLC System, Long Fully Porous Columns, and HRAM MS
Runsheng Z., Karel S., Christopher Pynn, et al. J. Proteome Res. 2022 Sept. DOI: https://doi.org/10.1021/acs.jproteome.2c00270.
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Single-Cell Proteome Profiling of Neuronal Cells
Misal, S.A., Kelly, R.T. (2022). In: Sweedler, J.V., Eberwine, J., Fraser, S.E. (eds) Single Cell ‘Omics of Neuronal Cells. Neuromethods, vol 184. Humana, New York, NY. DOI: https://doi.org/10.1007/978-1-0716-2525-5_3
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Development of Highly Sensitive LC–MS and CE–MS Methods for In-Depth Proteomic and Glycomic Profiling of Limited Biological Samples
August 1, 2022. Michal Gregus, Alan Zimmerman, Anne-Lise Marie, Kendall R. Johnson, Alexander R. Ivanov
LCGC North America, August 2022, Volume 40, Issue 8. Pages: 393–397
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In-Depth Mass Spectrometry-Based Proteomics of Formalin-Fixed, Paraffin-Embedded Tissues with a Spatial Resolution of 50–200 μm
Andikan J. Nwosu, Santosh A. Misal, Thy Truong, et al. J. Proteome Res. 2022 Aug.
DOI: https://doi.org/10.1021/acs.jproteome.2c00409.
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Protein SUMOylation is a sex-specific regulator of fear memory formation in the amygdala
Aspen Gustin, Shaghayegh Navabpour, KaylaFarrella, et al. 2022 Jul. DOI: https://doi.org/10.1016/j.bbr.2022.113928.
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Label-Free Profiling of up to 200 Single-Cell Proteomes per Day Using a Dual-Column Nanoflow Liquid Chromatography Platform
Kei G. I. Webber, Thy Truong, S. Madisyn Johnston, et al. Anal. Chem. 2022 Apr. 94, 15, 6017–6025.
DOI: https://doi.org/10.1021/acs.analchem.2c00646.
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Capillary Electrophoresis Coupled to Electrospray Ionization Tandem Mass Spectrometry for Ultra-Sensitive Proteomic Analysis of Limited Samples
Kendall R. Johnson, Michal Greguš, James C. Kostas, and Alexander R. Ivanov. Anal. Chem. 2022, 94, 2, 704–713. Jan 2022.
DOI: https://doi.org/10.1021/acs.analchem.1c02929.
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Proteomic Analysis Reveals Sex-Specific Protein Degradation Targets in the Amygdala During Fear Memory Formation
Farrell K, Musaus M, Navabpour S, et al. Front. Mol. Neurosci. 2021 Sept. 14:716284.
DOI: https://doi.org/10.3389/fnmol.2021.716284.
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Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO
DOI: https://doi.org/10.1021/acs.analchem.1c00990.
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Proteome Discoverer - A Community Enhanced Data Processing Suite for Protein Informatics